#!/opt/anaconda1anaconda2anaconda3/bin/python

# Copyright (C) 2015-2016 Association of Universities for Research in Astronomy (AURA)

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'''
This is a script to update JWST data files to include
barycentric and heliocentric times as computed from the spacecraft
times. It also updates the extension that contains the times
for each group by adding the necessary columns to that table.
'''

import argparse
import logging

import astropy.coordinates
import astropy.io.fits as fits
import astropy.time
import astropy.units as u
import numpy as np

from jwst import timeconversion

# Setup the logging.
logging.basicConfig(level=logging.INFO)


def set_bary_helio_times(filename, jwstpos=None):
    '''
    Compute the barycentric and heliocentric times for the
    given file and update the contents of the file to contain
    these values.
    '''
    logging.info('Starting set_bary_helio_times task')
    hdul = fits.open(filename, mode='update')
    pheader = hdul[0].header
    # Obtain the necessary info from the header
    targcoord = astropy.coordinates.SkyCoord(
        ra=pheader['TARG_RA'],
        dec=pheader['TARG_DEC'],
        frame='fk5',
        unit=(u.hourangle, u.deg)
    )
    starttime = pheader['EXPSTART']
    middletime = pheader['EXPMID']
    endtime = pheader['EXPEND']
    times = astropy.time.Time(
        np.array([starttime, middletime, endtime]),
        format='mjd', scale='utc').tt.mjd
    ((bstrtime, bmidtime, bendtime), (hstrtime, hmidtime, hendtime)) = \
        timeconversion.compute_bary_helio_time(
            targetcoord=(targcoord.ra.degree, targcoord.dec.degree),
            times=times
        )
    pheader['BSTRTIME'] = bstrtime
    pheader['BMIDTIME'] = bmidtime
    pheader['BENDTIME'] = bendtime
    pheader['BARTDELT'] = (bstrtime - starttime) * 86400.
    pheader['HSTRTIME'] = hstrtime
    pheader['HMIDTIME'] = hmidtime
    pheader['HENDTIME'] = hendtime
    pheader['HELIDELT'] = (hstrtime - starttime) * 86400.

    # Now modify the table
    try:
        tabhdu = hdul['GROUP']
    except KeyError:
        logging.info('No GROUP extension found. Ignoring GROUP calculations')
        pass
    else:
        logging.info('Calculating GROUP times')
        tendtimes = tabhdu.data['group_end_time']

        # replace colon as separator between date and time to be consistent
        tendtimeslist = [item[:10] + 'T' + item[11:] for item in tendtimes]
        astropy_endtimes = astropy.time.Time(
            tendtimeslist, format='isot', scale='utc'
        )
        mjdtimes = astropy_endtimes.tt.mjd
        try:
            btimes, htimes = timeconversion.compute_bary_helio_time(
                targetcoord=(targcoord.ra.degree, targcoord.dec.degree),
                times=mjdtimes
            )
        except Exception as exception:
            # Cleanup before exiting
            hdul.flush()
            hdul.close()
            raise Exception('Error in calculating times.') from exception
        else:
            bcol = fits.Column(
                name='bary_end_time', format='D', unit='MJD', array=btimes
            )
            hcol = fits.Column(
                name='helio_end_time', format='D', unit='MJD', array=htimes
            )

        binhdu = fits.BinTableHDU.from_columns(
            tabhdu.columns + fits.ColDefs([bcol, hcol])
        )
        binhdu.header['EXTNAME'] = 'GROUP'
        hdul['GROUP'] = binhdu

    hdul.flush()
    hdul.close()
    logging.info('Completed set_bary_helio_times task')


def main(args):

    if args.jwstpos:
        jwstposstr = args.jwstpos.split(',')
        jwstpos = [float(item) for item in jwstposstr]
    else:
        jwstpos = None
    for filename in args.filenames:
        set_bary_helio_times(filename, jwstpos=jwstpos)

if __name__ == '__main__':
    parser = argparse.ArgumentParser(
        description="Add corresponding barycentric and heliocentric times to JWST data files"
    )
    parser.add_argument('filenames', metavar='Filename', nargs='+')
    parser.add_argument(
        '--jwstpos',
        help="x,y,z JWST position relative to Earth's center in km as comma separated string of values"
    )
    args = parser.parse_args()
    main(args)
